EXECUTOR rrmd SPEC — Quarantine Banner Resolution
Goal
Bring all 30 QUARANTINED occurrences in the STRC vault (excluding labs/spaces/**) to a RESOLVED state by applying one of two disposition labels to each.
Policy baseline: Route A (2026-08-21) determined that the dB/audiogram outcome chain is NOT-MODELABLE. Evidence:
- Zero of 8 transfer-function calibration pairs in
models/abr_transfer_model.pyhas a primary source insources/lit/ - Bredberg 1968: no canonical paper note, no retrievable full text
- Schuknecht & Gacek 1993: PDF retrieved and MinerU-parsed; primary text contains no OHC-fraction-to-threshold pair
- “Sun 2024 OTOF Cohort 2” is a misattribution; the correct paper (Lv et al. 2024 Lancet) measures no functional-OHC fraction
- Structural blocker: a scalar functional-OHC fraction cannot map to a frequency-specific audiogram (tonotopy + non-uniform delivery make place-dependent calibration necessary)
Full detail: ~/Missions/STRC/labs/spaces/2026-08-21-refactor-rank-and-moderna/runs/hypa/DISPOSITION.md and ~/Missions/STRC/hypotheses/h04-mrna-lnp/phases/STRC h04 Outcome Chain Disposition 2026-08-21.md
Deliverables
All files are written under /Users/egorlyfar/Missions/STRC/labs/spaces/2026-08-21-refactor-rank-and-moderna/runs/hypd/:
- SPEC.md — this file (goal, policy, paths, done-criteria)
- INVENTORY.md — one row per QUARANTIN occurrence: file, line, kind (callout/excerpt/prose), claim, disposition choice, and reason
- apply.sh — idempotent bash script (
set -euo pipefail, explicit paths only, never deletes) that edits the vault files. The CHIEF runs this. - verify.sh — bash syntax check + dry-run on copied files to verify: (a) no UNRESOLVED QUARANTIN remains, (b) total count did not drop below 30
- verify.txt — output of verify.sh showing the check passed
Done-Criteria
✓ All 30 QUARANTIN occurrences identified and mapped to source files + lines
✓ Each occurrence assigned a disposition: NOT-MODELABLE: or RESOLVED-PROTEIN-LEVEL:
✓ Each disposition includes a one-line reason specific to the note’s claim
✓ apply.sh edits the vault files to add the disposition label in the same block as the QUARANTIN occurrence
✓ No banners deleted; total count remains 30
✓ No frontmatter (tier, mech, deliv, misha_fit, next_step) changed
✓ No content rewritten; only disposition labels added
✓ verify.sh on a dry-run copy confirms zero UNRESOLVED occurrences and count ≥ 30
Disposition Rules
NOT-MODELABLE: — Applied when the note makes a claim about dB/audiogram/hearing thresholds/outcomes that depends on the outcome chain. Reason must name the specific claim withdrawn (e.g., “dB band WITHDRAWN: Kd/coupling arithmetic stands” or “ABR improvement figure WITHDRAWN: per-OHC PK/PD inputs remain valid”).
RESOLVED-PROTEIN-LEVEL: — Applied ONLY when the note’s underlying claim genuinely survives when restated at the protein/cell level, and you state the protein-level restatement in one sentence. Example: h01 hub’s “h01 is the only arm that raises STRC protein in OHCs a vector never reaches, capped at 0.50 of diploid-normal DOSE.”
Default: When in doubt, use NOT-MODELABLE:. Over-claiming a protein-level rescue is worse than conservatively marking something not-modelable.
Anti-Goals (Failure Modes)
- Do NOT delete a banner. The count must stay at 30; it drops to zero by RESOLUTION, not removal.
- Do NOT invent, recalibrate, or change any dB number, band, or hearing category.
- Do NOT change frontmatter (
tier,mech,deliv,misha_fit,next_step). The chief owns the re-rank. - Do NOT write to the vault. Write only under
runs/hypd/. - Do NOT touch
~/Knowledge/Brain. - Do NOT re-open the outcome-chain question or retrieve literature. That is settled and out of scope.
File Paths (Read-only STRC)
- STRC vault:
/Users/egorlyfar/Missions/STRC/ - Target files (24 total) are identified by
rg -n "QUARANTIN" -g '*.md' --glob '!labs/**' - Includes
sites/egor-lol/src/data/hypothesis-ranking.md(published mirror ofhypotheses/index.md)
Write Paths
- SPEC.md:
/Users/egorlyfar/Missions/STRC/labs/spaces/2026-08-21-refactor-rank-and-moderna/runs/hypd/SPEC.md - INVENTORY.md:
/Users/egorlyfar/Missions/STRC/labs/spaces/2026-08-21-refactor-rank-and-moderna/runs/hypd/INVENTORY.md - apply.sh:
/Users/egorlyfar/Missions/STRC/labs/spaces/2026-08-21-refactor-rank-and-moderna/runs/hypd/apply.sh - verify.sh:
/Users/egorlyfar/Missions/STRC/labs/spaces/2026-08-21-refactor-rank-and-moderna/runs/hypd/verify.sh - verify.txt:
/Users/egorlyfar/Missions/STRC/labs/spaces/2026-08-21-refactor-rank-and-moderna/runs/hypd/verify.txt
herdr Signal Files
At completion, write exactly one line to each:
/Users/egorlyfar/.local/state/herdr-agent-teams/rrmd/turn-1.md—RESULT:orGATE:/Users/egorlyfar/.local/state/herdr-agent-teams/rrmd/turn-2.md—RESULT:orGATE:
Never both, never neither.