PIQ

Computational method modeling the magnitude and shape of genome-wide DNase profiles.

What it does

Quantifies transcription factor binding site occupancy dynamically to determine if a non-coding variant completely abolishes a binding motif.

How to use

GitHub repo no longer available. Try http://piq.csail.mit.edu/ for original code and documentation. Consider ENCODE or RegulomeDB for TF binding analysis.

STRC usage

Not directly applicable to E1659A via API. Requires local installation or web interface. See documentation for manual usage.

Connections

• STRC Variant c.4976A>C — Misha [see-also]
• STRC Gene [about]
• [part-of] Tools index