Actin kinetics + WH2 biophysics — validated parameters

Source agent: Domain 2 (Sonnet 4.6), 2026-04-23. Consumer: hydrogel_phase4d_factin_bundling_model.py + any actin-interacting therapeutic hypothesis.

Parameter table

ParameterLiterature valueSourceConditionsStatusUsed in
WH2 × G-actin Kd (WAVE, favorable)~50–100 nM (inferred)2026-04-23-chereau-wh2-actin-pnas (Chereau 2005 PNAS, Table 2 in SI — inaccessible)ITC, 25°C, G-buffer pH 7.5⚠ inferred from narrativeh09 Phase 4d
WH2 × G-actin Kd (WASP, weak)~200–500 nM (inferred)2026-04-23-chereau-wh2-actin-pnasSame⚠ inferredh09 Phase 4d
Isolated WASP V-domain × G-actin3.10 ± 0.5 μMPadrick/Kim 2011 (cited via Chereau)Fluorescence anisotropy✅ primaryreference bound
WASP WA domain × G-actin0.6 μMRohatgi 2000 Nat Cell BiolFluorescence anisotropy✅ secondarycontext
Full WH2 family range50 nM – 3 μM2026-04-23-dominguez-2016-wh2-nucleation-review (Trends Biochem Sci)Review statement✅ reviewframing
WH2 × F-actin side-binding KdNOT MEASURED in any paperliterature search exhaustiveNO PRIMARYh09 Phase 4d load-bearing
Tβ4 × F-actin (closest analog)5–10 mM (weak, cooperative)2026-04-23-husson-wh2-multifunctionalityDirect measurement✅ primaryrisk benchmark
ABD cross-linker (CH-domain) × F-actin~10 μM2026-04-23-pollard-2016-actin-review-cshpb review consensusVarious✅ reviewaffinity class reference
Profilin × G-actin Kd0.1 μM2026-04-23-pollard-2016-actin-review-cshpbITC✅ primarycontext
Actin polymerization k_on (barbed, ATP)11.6 μM⁻¹s⁻¹2026-04-23-pollard-1986-actin-rate-constants (JCB 1986)Standard✅ primarykinetics benchmark
Actin polymerization k_off (barbed, ATP)1.4 s⁻¹2026-04-23-pollard-1986-actin-rate-constantsStandard✅ primarykinetics benchmark

Stereocilia actin architecture (Barr-Gillespie line)

ParameterValueSourceNotes
Actin molecules per stereocilium (chick utricle E15)200,0002026-04-23-krey-2019-stereocilia-proteomics-elifeQMS absolute quant
Derived local [total actin]~3.5 mMfrom 200k molecules / 9.4e-17 L (200 nm dia × 3 μm)calculation
Derived local [F-actin]~3–5 mMassuming ~90% filamentouscalculation
Native inter-filament spacing (OHC core, plastin-1/fimbrin)7.9–9.7 nmKrey 2016 J Cell Biol (PMC5119939) — not retrieved as paper noteFFT-EM
Espin-crosslinked spacing~12 nmReview consensus (Krey 2016 cites)for comparison

Red flags in current h09 Phase 4d model

Model constantValueProblem
WH2_KD_GACTIN_M = 100 nMliterature KdPartially defensible for WAVE-like WH2 (50–100 nM). For WASP-type (which is what WH2-family SAPs typically use) real value is 200 nM – 3 μM. Model comment should read “50–500 nM depending on construct”.
WH2_KD_FACTIN_M = 5 μM”estimated 5–25× weaker”LOAD-BEARING RISK. Zero primary measurements exist. Closest analog (Tβ4 × F-actin) = 5–10 mM = 1,000–2,000× weaker than model’s 5 μM. Structurally disfavored (binding site buried in F-filament). Avidity from multi-WH2 on RADA16 scaffold could compensate in principle; Phase 2c wet-lab bundling assay is the only resolution.
STEREOCILIA_INTER_FILAMENT_NM = 12.0espin-specificNative OHC uses plastin-1/fimbrin → real spacing 7.9–9.7 nm (Krey 2016). For STRC exoprosthesis modeling, use 9 nm as default.

Critical takeaway

Central unvalidated assumption of h09: WH2 can side-bind F-actin at a therapeutically relevant Kd. Only possible via avidity (multiple WH2 copies per RADA16 fibril contacting the same F-actin surface). Single-molecule Kd at 5 μM is speculative optimism. Phase 2c wet-lab actin-bundling assay (co-sedimentation + TIRF colocalisation) becomes the primary risk gate, not AF3 triple-complex.

Connections