Zhao 2025 — Deciphering Enhancers for Hearing Loss Genes

Full title: Deciphering enhancers of hearing loss genes for gene therapy
Journal: Neuron (2025)
Authors: Zhao et al.
RAG book name: Zhao_2025_Deciphering-enhancers-hearing-loss-genes-gene-therapy

Why It Matters for Misha

Addresses a fundamental problem in gene therapy: how do you make a gene express in the right cells (OHCs specifically) and at the right level? Relevant for any STRC gene therapy vector design.

Key Findings

  • Introduces ARBITER workflow (AAV-reporter-based in vivo transcriptional enhancer reconstruction)
  • Applied to Slc26a5 (encodes prestin, OHC motor protein) and Myo7a (hair cell, Usher syndrome)
  • Found conserved non-coding elements (CNEs) in gene introns act as transcriptional enhancers
  • Slc26a5-E1 + E2 together control precise OHC-specific prestin expression
    • Knockout E1 alone: progressively reduced prestin, hearing loss
    • Knockout both: prestin completely absent, severe hearing loss
  • Enhancer B8 successfully restores hearing sensitivity in Slc26a5 knockout mice
  • Broadly applicable: workflow can identify cell-type-specific enhancers for any hearing loss gene

Why STRC-Relevant

  • STRC gene therapy needs OHC-specific promoters to drive stereocilin expression correctly
  • ARBITER-style enhancer discovery could identify optimal regulatory elements for STRC vectors
  • More specific promoters = fewer off-target effects = safer gene therapy

Connections